FA COST Action TD0801 StatSeq

BMBS COST Action BM1006 SeqAhead

Sequence Data Analysis Training School



Download course material from here :

Day 1

Setting up AWS
Setting up Putty and Connecting
Introduction to Linux


Day 2

Linux and Bioinformatics
Assessing quality of illumina data
Adapter and quality trimming of illumina data


Day 3

Alignment and SNP finding - Lecture
Alignment and SNP finding - Practical
Alignment and SNP finding - Practical + solutions


Day 4

RNA-Seq data analysis
RNA-Seq data analysis - Practical
RNA-Seq data analysis - Practical + solutions


Day 5

De Novo assembly - Lecture
De Novo assembly - Practical introduction
De Novo assembly - Practical
script : intersect_matches_and_repeats.pl
script : calcN50.pl




Course Organisation :Dr John BastiaansenDr Hendrik-Jan Megens
Tel. + 31 317483966Tel. + 31 317482469
john.bastiaansen@wur.nl hendrik-jan.megens@wur.nl

COST ACTION StatSeq :

Dr Marco Bink
Tel. +31 317481072
marco.bink@wur.nl

COST ACTION SeqAhead :

Dr Erik Bongcam-Rudloff
Tel. +46 18672121
erik.bongcam@slu.se