FA COST Action TD0801 StatSeq
BMBS COST Action BM1006 SeqAhead
Sequence Data Analysis Training School
Download course material from here :
Day 1
Setting up AWS
Setting up Putty and Connecting
Introduction to Linux
Day 2
Linux and Bioinformatics
Assessing quality of illumina data
Adapter and quality trimming of illumina data
Day 3
Alignment and SNP finding - Lecture
Alignment and SNP finding - Practical
Alignment and SNP finding - Practical + solutions
Day 4
RNA-Seq data analysis
RNA-Seq data analysis - Practical
RNA-Seq data analysis - Practical + solutions
Day 5
De Novo assembly - Lecture
De Novo assembly - Practical introduction
De Novo assembly - Practical
script : intersect_matches_and_repeats.pl
script : calcN50.pl
Course Organisation :
Dr John Bastiaansen
Dr Hendrik-Jan Megens
Tel. + 31 317483966
Tel. + 31 317482469
john.bastiaansen@wur.nl
hendrik-jan.megens@wur.nl
COST ACTION StatSeq :
Dr Marco Bink
Tel. +31 317481072
marco.bink@wur.nl
COST ACTION SeqAhead :
Dr Erik Bongcam-Rudloff
Tel. +46 18672121
erik.bongcam@slu.se